Draft genome sequence of adzuki bean

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August undefined, 2024

WebOct 13, 2015 · The draft genome sequence of adzuki bean was assembled on 11 pseudo-chromosomes, estimating 612 Mb or 75% of the estimated genome and high-confidence 26,857 protein-coding genes …

Development of a high-density genetic linkage map and ... - Nature

WebGene ontology analysis of rice bean draft genome sequence. Functional descriptions were assigned to predict rice bean genes. ... The comparison of total genome positions revealed the coverage of >88% of the physical distance of the adzuki bean genome, with 42 conserved synteny blocks, 72% of the mung bean genome, ... WebHere, we assembled a draft genome of adzuki bean into pseudo-chromosomes using sequence data from next … bantuan lpdp kemenkeu

Construction of a high-density adzuki bean genetic map and …

WebOct 12, 2015 · In this study, we obtained a high quality draft adzuki bean genome sequence, in which more than 86% of the genome was assembled, and approximately 80% of sequences were assigned to chromosomes. A total of 34,183 protein-coding genes were predicted. Genome duplication analysis revealed that the adzuki bean genome, unlike … WebIn this study, VaNATA1, the N-acetyltransferase gene from Vigna angularis, was separately obtained from genomic DNA (gDNA) and complementary DNA (cDNA) samples using PCR. The two sequences amplified from gDNA and cDNA were exactly the same and were composed of 552 nucleotides, indicating that there is no intron insert in VaNATA1. WebRajeev Kumar Varshney (born 13 July 1973) is an agricultural scientist, specializing in genomics, genetics, molecular breeding and capacity building in developing countries. Varshney is currently serving as Director, … bantuan madrasah 2023

Frontiers Draft Genome Sequence of Bacillus pumilus ku-bf1 …

Permanent Draft Genome Sequence of the French Bean Symbiont

WebJul 1, 2024 · Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (2015), Article 8069 Google Scholar. Li and Durbin, 2009. ... “Vi’gGS”: A genomic … WebFeb 13, 2014 · One important aspect of assembly quality is total sequencing coverage. Total coverage in RPGC is equal to (# F 2 s)* (coverage/F 2 ), so that 5× coverage for … bantuan m40 2023WebJan 28, 2015 · Here, we report a draft genome sequence of adzuki bean. The genome assembly covers 75% of the estimated genome and was mapped to 11 pseudo-chromosomes. Gene prediction revealed 26,857 … bantuan madrasah 2021

"WebHere, we report a draft genome sequence of adzuki bean. The genome assembly covers 75% of the estimated genome and was mapped to 11 pseudo-chromosomes. Gene … " - Draft genome sequence of adzuki bean

Draft genome sequence of adzuki bean

WebHere, we generated a high-quality draft genome sequence of adzuki bean by whole-genome shotgun sequencing. The assem-bled contig sequences reached to 450 Mb (83% of the genome) with an N50 of 38 kb, and the total scaffold sequences were 466.7 Mb with an N50 of 1.29 Mb. Of them, 372.9 Mb of scaffold sequences WebAdzuki bean (Vigna angularis var. angularis) is a dietary legume crop in East Asia. The presumed progenitor (Vigna angularis var. nipponensis) is widely found in East Asia, suggesting speciation and domestication in these temperate climate regions. Here, we report a draft genome sequence of adzuki bean. The genome assembly covers 75% …

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WebApr 1, 2024 · We present a draft genome assembly with a de novo prediction and automated functional annotation of coding genes, and a reference transcriptome of the … WebJan 19, 2010 · Adzuki or small red beans (Vigna angularis) are a popular ingredient in many confections in the Orient.The predominant use of adzuki in traditional Japanese confections is a paste or wagashi such as youkan, manju and amanatto [1,2,3].Adzuki beans are a rich source of carbohydrates, protein, vitamins, minerals and fiber []; …

WebJan 28, 2015 · Europe PMC is an archive of life sciences journal literature. WebDec 7, 2015 · Here, we present the first genome database for genus Vigna, the Vigna Genome Server (‘ Vig GS’), which is based on a high-quality, annotated azuki bean reference genome sequence. Database Contents and Data Analysis Gene annotation. For the first version of the azuki bean genome assembly (Vangularis_v1), gene structures …

WebOct 12, 2015 · The draft genome sequence provides a resource for studying adzuki bean genomics and genetics, promoting adzuki bean improvement. Results and Discussion … WebFeb 1, 2024 · The genome assembly spans … We present a draft genome assembly with a de novo prediction and automated functional annotation of coding genes, and a reference transcriptome of the Adzuki bean borer, Ostrinia scapulalis, based on RNA sequencing of various tissues and developmental stages.

WebJul 1, 2024 · Draft genome sequence of adzuki bean, Vigna angularis. Scientific Reports, 5 (2015), Article 8069 Google Scholar. Li and Durbin, 2009. ... “Vi’gGS”: A genomic knowledge base of the genus Vigna based on high-quality, annotated genome sequence of the azuki bean, Vigna angularis (Willd.) Ohwi & Ohashi. Plant and Cell Physiology, 57 …

WebDec 23, 2016 · The mapping of SLAF markers to scaffolds will improve the ordering and orientation of the remaining unplaced sequences in the two draft genome sequence databases of adzuki bean. Genomic synteny ... bantuan madrasah 2022WebApr 21, 2024 · Adzuki beans are an important food legume crop in East Asia. A large number of adzuki bean accessions are maintained in the Chinese national seed genebank. A collection of 59 elite cultivars, 389 landraces, and 27 wild adzuki beans were selected and phenotyped extensively for yield and yield-related traits at two different locations … bantuan mahasiswa sabahWebAug 31, 2024 · The full-length single-molecular sequencing and short reads Illumina sequencing were combined to generate the transcripts of adzuki bean with high-quality. A total of 17,636 loci and 60,454 transcripts were detected in this study. To characterize the drought-responsive genes during seed germination in adzuki bean, two varieties, i.e., … bantuan mafiWebOct 13, 2015 · Furthermore, re-sequencing of 49 accessions including 11 wild, 11 semi-wild, 17 landraces, and 10 improved varieties and population analyses revealed that semi-wild adzuki bean is the progenitor ... bantuan maidam 2022WebSuk Ha Lee works at Department of Agriculture, Forestry and Bioresourc and is well known for Vigna Radiata, Adzuki Bean and Glycine Max. download . FREE Custom List . KOL stands for Key Opinion Leader. Therapeutic areas. close . Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism. bantuan mahasiswa perakWebThe draft genome se- quence provides a resource for studying adzuki bean genomics and genetics, promoting adzuki bean improvement. Results and Discussion Genome … bantuan maidam pendidikanWebMar 28, 2024 · Draft Genome Sequence. MGI Glossary. Definition. Sequence of genomic DNA having lower accuracy than finished sequence; some segments are missing or in … bantuan maidam ipta